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Dedicated population genomics for the silent world: the specific questions of marine population genetics ArchiMer
Bierne, Nicolas; Bonhomme, Francois; Arnaud-haond, Sophie.
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Ano: 2016 URL: https://archimer.ifremer.fr/doc/00374/48545/48841.pdf
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Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato ArchiMer
Brener-raffalli, Kelly; Clerissi, Camille; Vidal-dupiol, Jeremie; Adjeroud, Mehdi; Bonhomme, Francois; Pratlong, Marine; Aurelle, Didier; Mitta, Guillaume; Toulza, Eve.
Background: Although the term holobiont has been popularized in corals with the advent of the hologenome theory of evolution, the underlying concepts are still a matter of debate. Indeed, the relative contribution of host and environment and especially thermal regime in shaping the microbial communities should be examined carefully to evaluate the potential role of symbionts for holobiont adaptation in the context of global changes. We used the sessile, long-lived, symbiotic and environmentally sensitive reef-building coral Pocillopora damicornis to address these issues. Results: We sampled Pocillopora damicornis colonies corresponding to two different mitochondrial lineages in different geographic areas displaying different thermal regimes: Djibouti,...
Tipo: Text Palavras-chave: Coral holobiont; Microbiota; Bacterial communities; Symbiodinium assemblages; Thermal adaptation; Scleractinian corals; Coral reefs; Pocillopora damicornis.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00429/54076/55380.pdf
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The origin and remolding of genomic islands of differentiation in the European sea bass ArchiMer
Duranton, Maud; Allal, Francois; Fraisse, Christelle; Bierne, Nicolas; Bonhomme, Francois; Gagnaire, Pierre-alexandre.
Speciation is a complex process that leads to the progressive establishment of reproductive isolation barriers between diverging populations. Genome-wide comparisons between closely related species have revealed the existence of heterogeneous divergence patterns, dominated by genomic islands of increased divergence supposed to contain reproductive isolation loci. However, this divergence landscape only provides a static picture of the dynamic process of speciation, during which confounding mechanisms unrelated to speciation can interfere. Here we use haplotype-resolved whole-genome sequences to identify the mechanisms responsible for the formation of genomic islands between Atlantic and Mediterranean sea bass lineages. Local ancestry patterns show that...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00446/55750/57409.pdf
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The contribution of ancient admixture to reproductive isolation between European sea bass lineages ArchiMer
Duranton, Maud; Allal, Francois; Valiere, Sophie; Bouchez, Olivier; Bonhomme, Francois; Gagnaire, Pierre-alexandre.
Understanding how new species arise through the progressive establishment of reproductive isolation (RI) barriers between diverging populations is a major goal in Evolutionary Biology. An important result of speciation genomics studies is that genomic regions involved in RI frequently harbor anciently diverged haplotypes that predate the reconstructed history of species divergence. The possible origins of these old alleles remain much debated, as they relate to contrasting mechanisms of speciation that are not yet fully understood. In the European sea bass (Dicentrarchus labrax), the genomic regions involved in RI between Atlantic and Mediterranean lineages are enriched for anciently diverged alleles of unknown origin. Here, we used haplotype-resolved...
Tipo: Text Palavras-chave: Ancient admixture; Introgression; Reproductive isolation; Genomic conflicts; Marine fish.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00636/74768/74920.pdf
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